OBM Genetics

ISSN 2577-5790
Free Publication in 2018

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Current Issue: 2018  Archive: 2017 
Review

Experimental DNA- or RNA-Directed Therapies for Trinucleotide Repeat Disease

Inês Lopes Cardoso *

  1. PhD in Biotechnology by Biotechnology Superior School of Portuguese Catholic University. Associate Professor at Fernando Pessoa University, Porto, Portugal

*   Correspondence: Inês Lopes Cardoso

Received: April 17, 2018 | Accepted: July 24, 2018 | Published: July 27, 2018

OBM Genetics 2018, Volume 2, Issue 3 doi:10.21926/obm.genet.1803025

Academic Editor: Khue Vu Nguyen

Special Issue: Treatment of Genetic Disease

Recommended citation: Cardoso IL. Experimental DNA- or RNA-Directed Therapies for Trinucleotide Repeat Disease. OBM Genetics 2018;2(3):025; doi:10.21926/obm.genet.1803025.

© 2018 by the authors. This is an open access article distributed under the conditions of the Creative Commons by Attribution License, which permits unrestricted use, distribution, and reproduction in any medium or format, provided the original work is correctly cited.

Abstract

Some repeats of three or more nucleotides in tandem, which are present in a gene or in its vicinity, tend to increase in number and for this reason are called dynamic mutations. These triplet repeats are unstable and can expand from one generation to the next. According to the expansion size, an unaffected individual can carry a pre-mutation that will expand through generations leading to the development of triplet repeat expansion diseases. The increase in the number of repeats over time leads to earlier development and increased severity of symptoms in affected individuals in successive generations. Although there is still no treatment for this type of disease, several strategies are under investigation. Here, we describe treatment approaches for triplet repeat expansion diseases that have been developed over recent years, using DNA or RNA molecules as targets. Some of these strategies have the potential for future use in gene therapy for trinucleotide repeat disorders.

Keywords

Treatment of trinucleotide repeat diseases; RNA interference; antisense oligonucleotides; experimental therapies; Myotonic Dystrophy; Huntington disease

1. Introduction

All eukaryotic and prokaryotic genomes contain a certain number of repetitive sequences that can vary in length and repetitive levels similar to long repeats and satellite DNA [1,2,3,4]. Overall, 30% of the human genome consists of repetitive DNA sequences [5].

The presence of trinucleotide repeats (microsatellites), also known as tandem repeat sequences, that are responsible for the development of diseases was identified as a novel type of mutation in the early 1990s [6]. This type of repetitive sequence is susceptible a high frequency of mutations in all genomes [2,7].

Diverse hereditary neurological disorders are caused by expansion of unstable triplet repeats [8]. Trinucleotide repeat expansions have been identified as the cause of approximately 20 neurologic and neuromuscular diseases, although the mechanisms underlying their development remain to be elucidated [5,9]. Examples of this type of disease include myotonic dystrophy (DM) Huntington disease (HD), fragile X syndrome, and many others resulting from the accumulation of triplet repeats (CTG-CAG, CGG-CCG or GAA-TTC) in corresponding genes [9,10]. Symptoms start to develop in carriers of the repeat as soon as a sufficient number of triplet copies are acquired. This number increases in successive generations due to somatic instability of the expanded sequence, leading to the unusual pattern of genetic anticipation, a phenomenon in which each generation shows earlier onset of the disease together with increasing severity of the symptoms [9,10].

Despite great efforts in the last decade, there is still no cure for these disorders [6]; however, several treatment strategies are under development. Here, we discuss the most recently studied treatment approaches directed against nucleic acids, some of which have potential applications in future gene therapy of trinucleotide repeat expansion disorders.

2. Materials and Methods

This review was conducted through searches of scientific publications, review papers, books and theses available in the PubMed, B-On, SciELO, and Science Direct databases, as well as the libraries of O´Porto Medicine Faculty (FMUP) and Fernando Pessoa University. Searches were performed using the following keywords were: “treatment of trinucleotide repeat diseases”, “diseases of trinucleotide repeats”, “neurodegenerative disorders”, “spinocerebellar ataxia”, “Huntington disease”, “fragile X disease”, “myotonic dystrophy”, “Friedrich ataxia”, “fragile X-associated ataxia”.

3. Experimental Therapies Directed Against Triplet Repeats

Development of selective therapeutic strategies is based on differences between normal and mutant transcripts in terms of repeat sequence length and assumed secondary structures [6].

The most promising approaches for possible treatments are aimed at lowering mutant protein synthesis by targeting DNA or RNA transcripts in cases of diseases where there is a gain-of-function.

On the other hand, other strategies aimed at increasing expression of the wild-type gene by targeting DNA are under development for the treatment of genetic diseases resulting from decreased gene expression.

The treatment approaches discussed here are divided in accordance with the target nucleic acid: RNA transcript or DNA.

3.1. RNA-Targeting Strategies

RNA-targeting has been developed using three main strategies directed against triplet RNA repeats: RNA interference (RNAi), antisense oligonucleotides (ASOs) or the use of splicing inhibitors.

RNA Interference (RNAi). RNA interference (RNAi) is based on degradation of mutant transcripts since these RNA molecules bind to mRNA in the cytoplasm, leading to its degradation by the RNase enzyme, argonaute 2 [11].

These antisense reagents, together with antisense oligonucleotides, are known as “cutters” since they attach to complementary targets and induce their cleavage.

In 2015, Bisset et al. [12] proposed this strategy as a promising therapeutic approach for genetic disorders involving gain-of-function. These researchers designed miRNA-based RNAi hairpins to target the mutant CUG expansion mRNA in a mouse model of myotonic dystrophy type 1 (DM1). As a route to systemic gene therapy in mice, the RNAi expression cassettes were delivered by intravenous injection of recombinant adeno-associated viral vectors. A significant reduction in disease pathology in the muscles of treated mice was observed, together with reduced mutant mRNA levels and a decrease in myonuclear foci containing the mutant mRNA. It was concluded that RNAi has potential as a long-term therapy for DM1 and other dominant muscular dystrophies [12].

This methodology has also been used in studies of the treatment of Huntington disease. Harper et al. [13] demonstrated that RNAi directed against the mutant human htt gene, reduced huntingtin expression at both the mRNA and protein levels in cell cultures and HD mouse brain. Furthermore, delivery of adeno-associated virus constructs containing short hairpin RNAs that reduced htt gene expression resulted in improvements in the neuropathological changes associated with HD in a mouse model [13].

Franich et al. [14] used RNAi to target mutant htt gene expression mediated by virus vector delivery in HD transgenic mouse models. This strategy was shown to mediate a dramatic knockdown in mutant HD gene expression, preventing striatal neurodegeneration and concomitant motor behavioral impairment [14].

In a study of the safety of RNAi treatment in primates, McBride et al. [15] demonstrated that a 45% reduction in rhesus htt gene expression did not induce motor deficits or neuronal degeneration. This study suggests that partial suppression of wild-type htt expression is well-tolerated in the primate and further supports the use of RNAi as a therapy for HD [15].

Miniarikova et al. [16] evaluated two RNAi-based approaches for the treatment of HD. They observed total silencing of wild-type and mutant huntingtin (HTT) protein following RNAi-mediated targeting of exon 1 of the htt gene. These researchers also used an allele-specific silencing strategy based on targeting the heterozygous single nucleotide polymorphism rs362331 in exon 50 or rs362307 in exon 67, which are linked to mutant HTT [16]. They observed strong allele-selective silencing of mutant HTT when targeting rs362331 both in vitro and in vivo [16]. This study showed that a single treatment provides a sustained reduction in HTT expression.

RNAi has been proposed as a strategy for gene therapy of genetic disorders. As a good example of this approach, Keiser et al. [17] reported that spinocerebellar ataxia type 1 could be reversed by RNAi therapy. These researchers had previously shown that partial suppression of mutant ataxin-1 gene expression following delivery of a single dose of virus could prevent the development of disease symptoms in a transgenic mouse model and a knock-in mouse model of the disease [18]. Their subsequent investigations then showed that RNAi not only prevented, but also reversed disease development when delivered after the onset of symptoms. In this study, a recombinant adeno-associated virus expressing an artificial miRNA targeting human ATXN1 mRNA was delivered at multiple doses in a mouse model of spinocerebellar ataxia type 1, before or after symptom onset [17].

Antisense Oligonucleotides (ASOs). Antisense oligonucleotides (ASOs) are complementary to mutant mRNAs, and thus hybridize with them, catalysing degradation of these transcripts by RNase H and consequently, leading to a reduction in coded protein levels [6].

Wheeler et al. [19,20] observed that DM1 nuclear expansions are highly sensitive to antisense silencing. A transgenic mouse model of DM1 expressing human skeletal actin transcripts with the expansion (CUG)250 inserted in the 3′-UTR was used to show that it is possible to reverse changes observed in myotonic dystrophy. This was achieved by administration of a morpholino ASO, CAG25, which binds to CUGexp RNA and blocks its interaction with CUGexp-binding proteins [19]. The morpholino ASO was loaded into muscle fibers by intramuscular injection followed by in vivo electroporation. The muscular tissue was then examined 1–3 weeks later by fluorescence in situ hybridization using probes that hybridize to the CUG repeat or to sequences flanking the repeat. Injection of CAG25 caused a marked reduction in nuclear foci and a redistribution of CUGexp-binding proteins [19]. Moreover, these researchers obtained a rapid knockdown of CUGexp RNA in skeletal muscle in the DM1 mouse model by systemic administration of ASOs [20].

In the same way, Mulders et al. [21] reported the use of ASOs in a mouse DM1 cell model and DM1 patient cells. Cells were transfected with ASOs complexed with polyethyleneimine. A (CAG)7 ASO silenced RNA expression of mutant myotonic dystrophy protein kinase and reduced the number of ribonuclear aggregates. The study also showed that direct administration of this ASO into the muscle of DM1 model mice caused a significant reduction in the level of toxic RNA [21].

Other researchers used ASOs containing modified nucleic acid residues, known as “gapmers”, to induce RNase H-mediated degradation of DM1 pathogenic transcripts [22]. Using RT-PCR to quantify the mutant transcript, this study showed selective knockdown of expanded CUG transcripts and consequent disruption of RNA foci both in cell culture and DM1 mouse models [22]. Furthermore, these researchers concluded that the combination of gapmers and morpholino ASOs has the potential to enhance the knockdown effect [22].

ASOs were also tested in the treatment of HD. Kordasiewicz et al. [23] observed a delay in disease progression following transient infusion of ASOs into the cerebrospinal fluid in a symptomatic HD mouse model. They also observed a sustained reversal of the disease phenotype that persisted longer than the huntingtin knockdown. Reduction of wild-type huntingtin, along with mutant huntingtin, produced the same sustained disease reversal. ASO infusion into non-human primates had a similar effect, with an 80% reduction in huntingtin transcript levels observed using this strategy [23].

Moreover, using an HD mouse model, Datson et al. [24] observed a reduction (15%–60%) in soluble and aggregated mutant HTT protein in the brains of mice following infusions of (CUG)7 ASOs [24].

ASOs were also tested in the treatment of the neurodegenerative disorder spinocerebellar ataxia type-3. Evers et al. [25] attempted to remove the toxic polyglutamine repeat from the atazin-3 protein through antisense oligonucleotide-mediated exon skipping. This strategy produced a reduction in mutant ataxin-3 toxicity, while maintaining important functions of the wild-type protein. In vitro studies showed that exon skipping did not negatively impact the ubiquitin-binding capacity of ataxin-3 and no toxic properties of the novel truncated ataxin-3 protein were detected in the in vivo tests [25]. These researchers used this strategy for skipping of exon 8 and 9, resulting in the removal of a central region of 88 amino acids in the ataxin-3 protein that contains several predicted cleavage sites and two ubiquitin-interacting motifs. In vitro studies showed that the truncated ataxin-3 protein did not show cellular toxicity but was unable to bind poly-ubiquitin chains, which may interfere with its normal de-ubiquitinating function. Therefore, these researchers concluded that skipping of exon 8 and 9 is not a viable therapeutic option for this disorder [26]. However, exon 10 skipping led to the formation of a truncated ataxin-3 protein lacking the toxic polyglutamine expansion and retaining its ubiquitin-binding and cleavage function. These data suggested that exon 10 skipping is a promising therapeutic approach for spinocerebellar ataxia type 3 [27].

Splicing Inhibitors. Splicing inhibitors have been used in the treatment of spinal muscular atrophy, which results from deficiency of a protein required for the survival of motor neurons. This genetic disorder is caused by mutation or deletion of the survival motor neuron 1 (SMN1) gene. In the absence of this protein, neurons gradually die and patient’s muscles waste away, leading to death. Naryshkin et al. [28] discovered small-molecule drugs that increase synthesis of the missing protein by inhibiting the alternative splicing that leads to the generation of the truncated SMN protein and neuromuscular degeneration [28]. In mouse models of severe spinal muscular atrophy, administration of these compounds produced a marked improvement in muscle mass, motor function and survival [28]. These splicing modifiers may have therapeutic potential for patients with spinal muscular atrophy.

Furamidine, a RNA CAG Binder. In Huntington disease, the mutant CAG-repeat RNA codes for neurotoxic polyglutamine proteins and can lead to a toxic gain-of-function by recruitment of RNA-binding proteins. The link between these molecules induces aberrant HTT protein translation. Matthes et al. [29] identified a set of CAG repeat binders, one of which, furamidine, reduced the binding of huntingtin mRNA to several RNA-binding proteins in vitro [29]. Moreover, furamidine also decreased HTT protein levels in an HD cell line model [29]. However, this ligand, which can also bind to AU RNAs, CUG RNAs or even the DNA minor groove (AT), seems to bind the CAG-repeat RNA in an unspecific manner and only when present in high concentrations. Thus, due to the high risk of off-target effects, furamidine is not a good candidate as an anti-HD drug. Nevertheless, this study shows that small molecules that mask RNA-protein interactions may be active against the mutant HTT protein [29].

3.2. DNA Targeting Strategies

In trinucleotide repeat diseases where there is a gain-of-function, targeting DNA to reduce protein expression represents a strategy for gene therapy. Several approaches are currently being tested, including the use of zinc finger proteins, clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9), and transcription activator-like effector nucleases (TALENs) as well as peptide nucleic acid (PNA)-peptide conjugates and locked nucleic acid (LNA) oligomers.

The main advantage of the use of zinc finger proteins, TALENs or CRISPR/Cas9 is that these strategies allow the introduction of a double-stranded break at specific points in the DNA and thus, induce homology-directed repair [30]. These therapies have been tested for the insertion of a functional copy of an entire gene in a precisely targeted region. They can also be used to correct pathogenic mutations in situ [30].

In other triplet repeat diseases, such as Friedreich’s ataxia or spinal muscular dystrophy, the expanded repeat leads to a reduction in gene expression. In addition to the already described RNA-targeting strategies that can lead to increased gene expression, other methods have been developed to target DNA directly (for example ASOs), induce pharmacological modulation or inhibit histone deacetylase (HDAC).

Zinc Finger Proteins. Zinc finger proteins can be targeted to specific DNA sequences and form a structural motif able to bind DNA, resulting in a reduction in protein synthesis.

This strategy has been used to reduce levels of mutant huntingtin protein in HD animal models. For example, Garriga–Canut et al. [31] used long artificial zinc finger protein chains, designed to bind longer CAG-repeats more strongly than shorter repeats, in an HD mouse model. Based on the ability to recognize both poly-CAG and its complementary DNA strand, the designed zinc finger proteins recognized and bound to poly-5′-GC (A/T)-3′. These chains mediated preferential repression of target genes with longer CAG-repeats, when compared with shorter repeats following transient transfection and stable expression in various HD model cell lines. The stable expression of this zinc finger protein in an HD cell line model reduced chromosomal expression of the mutant gene at both the protein and mRNA levels (95% and 78% reduction, respectively) [31]. Wild-type gene expression was not affected by this strategy. Similar effects were observed following adeno-associated virus delivery in an HD mouse model in vivo.

Similarly, Agustin–Parón et al. [32] designed a gene therapy strategy using a zinc finger transcription repressor that binds to expanded DNA CAG-repeats in the huntingtin gene. This study showed repression reaching 77% of the mutant huntingtin gene expression in whole brains of HD model mice [32]. A 48% repression was still observed 12 weeks after treatment and a 23% repression after 24 weeks, demonstrating that long-term effects can be achieved using this approach. However, since these proteins lead to the formation of non-native molecules, there is a risk increased immunogenicity and developing immune reactions [32].

Moreover, Kim and Kim [33] reported cytotoxicity, off-target effects and relatively low efficiency using zinc finger proteins [33].

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-Associated 9 (Cas9). In the bacterial immune system, the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) gene-editing system can be used to introduce double-stranded breaks in foreign DNA with high efficiency, low cytotoxicity, and relatively few off-target effects [34].

The Cas9 protein cuts target DNA, and the targeted sequence is repaired by gene-editing processes involving the non-homologous end-joining (NHEJ) and homology-directed repair (HDR) mechanisms. NHEJ results in the addition or deletion of nucleotides, whereas, HDR editing results in full DNA sequence restoration and can only be used when a homologous DNA sequence is present [35].

In HDR, targeted introduction of a donor sequence into the genome at the position of a CRISPR/Cas9-mediated DNA break is performed using genome-engineered constructs carrying homologous sequences [35].

In a recent study, this novel strategy was shown to induce the recovery of a normal phenotype in myogenic cells derived from fibroblasts of patients with myotonic dystrophy type 1 [36]. With the aim of eliminating the toxic mutant repeats, CRISPR/Cas9 facilitated removal of the repeat expansions, therefore, preventing nuclear foci formation and splicing alterations [36]. Compared with previously described strategies, this study demonstrated the advantage of this approach in that affected cells permanently reverted to the normal phenotype; however, off-target activity was observed [36]. Subsequent studies focused on improvement of the targeting specificity and adjustable expression of Cas9 nuclease, which are critical for therapeutic application of this strategy, since genome editing leads to permanent modifications.

Pinto et al. [37] tested the hypothesis that deactivation of the Cas9 enzyme impedes transcription across expanded microsatellites in DM1 cells. Systemic delivery of dCas9/gRNA by adeno-associated virus led to a reduction in mutant RNA and decreased myotonia [37]. These results indicate that transcription of microsatellite repeat-containing RNAs is more sensitive to the action of Cas9 than transcription of other RNAs, making it a potential strategy for therapeutic intervention.

Permanent inactivation of the Huntington disease mutation in fibroblasts of a patient was also achieved by Shin et al. using this approach [38]. In this study, the use of haplotype-specific CRISPR/Cas9 was demonstrated to inactivate the mutant HD allele. Two CRISPR/Cas9 guide RNAs that depend on protospacer-adjacent motif sites resulting from single nucleotide polymorphism alleles on the mutant chromosome were used to selectively excise a region of DNA (approximately 44 kb) spanning the promoter region, transcription start site, and the CAG expansion mutation of the mutant htt gene, resulting in complete inactivation of the mutant allele without changes in the wild-type allele [38]. This prevented the formation of mutant HTT mRNA and protein, unequivocally indicating permanent mutant allele-specific inactivation of the HD mutant allele [38]. Potentially, this strategy could be used as gene therapy for disorders with diverse disease haplotypes, supporting precision medicine by inactivation of gain-of-function mutations.

Moreover, a recent study described the development of a programmable CRISPR system capable of specifically visualizing and eliminating toxic RNAs resulting from microsatellite repeat expansions present in DNA [39]. Researchers observed reversal of hallmark features of disease, including elimination of RNA foci, in the cells of patients of affected by each of the studied diseases (DM1, DM2, C9-ALS, polyglutamine diseases) [39].

Several studies compared the mutagenic rates of CRISPR/Cas9, zinc finger proteins and TALENs. Kim and Kim [33] observed similar mutation rates for all methods, while Auer and Del Bene [35] showed CRISPR/Cas9 mutation rates ranging between 42% and 100% compared with a mutation rate of 33% for TALENs [35]. In another study, mutation rates of 11% for TALENs and 76% for CRISPR-Cas9, were recorded for the same gene [40].

In the same way, He et al. [41] observed more efficient targeted genomic deletions together with more precise re-joining of breakpoint junctions induced by CRISPR/Cas9 compared with the use of TALENs. In comparisons of the ability to edit an integrated gene, CRISPR/Cas9 was found to be superior for targeted genomic deletions, while TALENs outperformed CRISPR/Cas9 for stimulation of concurrent HDR at proximal sites within a single gene [41].

Kolli et al. [42] reported a relatively low rate of HDR using CRISPR/Cas9 and other studies suggest that the rate of HDR is dependent on gRNA concentration and Cas9 protein availability [43,44].

A recent study showed similar behavior of heterodimeric zinc finger proteins and CRISPR/Cas9 for homology-directed gene knock-in strategies (88% and 83%, respectively, of the donors inserted in the target locus), whereas homodimeric zinc finger proteins showed only 45% on-target insertions [45].

Although CRISPR/Cas9 has enormous potential for gene therapy and genome editing applications, some challenges need to be overcome before this approach can be used for the treatment of human diseases. One of the most important challenges, is the reduction of off-target effects. Since the gRNA of the CRISPR/Cas9 targeting system is only 17–24 bp in length, there is a high chance that the selected sequence exists elsewhere besides the target regions. Moreover, sequences with small changes to the target gRNA sequence might exist in the genome and can cause mis-targeting. However, several studies suggest that Cas9 can withstand mismatches, and is dependent on the distribution and number of mismatched nucleotides [46,47,48]. Kim and Kim [33] reported that off-target effects of CRISPR/Cas9 system can be reduced by altering the Cas9 enzyme to act as a nickase, capable of cleaving only one target DNA strand [33].

Transcription Activator-Like Effector Nucleases (TALENs). Like zinc finger nucleases and CRISPR)/CRISPR-Cas9, transcription activator-like effector nucleases (TALENs) are engineered nucleases that have been widely used to generate double-strand DNA breaks (DSBs) to increase the efficiency of standard homologous recombination. Mosbach et al. [49] showed that a TALEN-induced double-stranded break was very efficient at contracting expanded CTG repeats in yeast. This study showed that, following the TALEN-induced double-strand break, single-strand annealing occurred between both sides of the repeat tract, leading to repeat contraction [49]. These results implicate TALENs as a promising strategy for gene therapy of trinucleotide repeat disorders; however, although TALENs have a higher efficiency than zinc finger proteins, it requires huge resources, and delivery into cells is often a challenge [33,34].

Peptide Nucleic Acid (PNA)-Peptide Conjugates and Locked Nucleic Acid (LNA) Oligomers. An important issue in therapy directed against triplet repeats is the need for gene and allele selectivity. Although numerous mRNAs in the human transcriptome contain triplet repeats, the specific inhibition of mutant gene expression by targeting certain repeat regions is a promising therapy strategy for these types of diseases [6].

Agents have been developed to distinguish between RNA hairpin structures formed by wild-type and mutant RNAs based on differences in length and consequently, in stability.

Hu et al. [50] used peptide nucleic acid (PNA)-peptide conjugates and locked nucleic acid (LNA) oligomers for specific reduction of mutant huntingtin gene expression [50]. PNAs, which are a class of DNA/RNA mimic with an uncharged amide backbone, are advantageous as agents for binding complementary RNA sequences due to the lack of charge-charge repulsion of RNA/DNA or RNA/RNA duplexes. This results in an increase in the affinity of PNA hybridization and recognition of target sequences. PNAs can be delivered to live cells and are resistant to proteases and nucleases, which makes them promising therapeutic agents. PNA oligomers hybridize to DNA and RNA in a sequence-specific manner. Kiliszek et al. [51] demonstrated the high sequence-specificity of PNAs in studies of the crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches. Using this technique, only fully complementary RNA-PNA duplexes could be obtained, while co-crystallization trials of mismatching RNA with PNA resulted only in crystals of mismatched PNA-PNA [51]. This sequence selectivity is a desirable property for antisense therapeutic strategies against trinucleotide repeat expansion diseases since it will allow inhibition of mutant gene expression without interfering with the wild-type gene.

On the other hand, LNAs are RNA analogs containing a methylene bridge between the 2'-oxygen and 4'-carbon of the ribose. This bridge reduces the conformational flexibility of ribose and confers outstanding affinity in complementary hybridization. Hu et al. [50] observed that LNAs, as well as previously described PNAs, can confer potent allele-selective inhibition of mutant huntingtin gene expression [50]. In the same way, Rué et al. [52] observed that a LNA-modified antisense oligonucleotide complementary to the CAG-repeat (LNA-CTG) preferentially bound to mutant htt gene without affecting wild-type HTT mRNA or protein levels. Furthermore, these researchers observed that this strategy promotes neuroprotection in a mouse model of HD by blocking the detrimental activity of CAG-repeats in the htt gene [52].

Antisense Oligonucleotides (ASOs). ASOs have also been used to increase gene expression in cell lines derived from patients with Friedreich’s ataxia and spinal muscular dystrophy [53,54]. The proposed mechanism by which ASOs increase gene expression involves the binding of these compounds to the expanded repeat and blockade of the expanded RNA, which inhibits recognition of DNA, prevents R-loop formation and allows more gene expression.

A study by Li et al. [53] demonstrated that ASOs and dsRNAs can activate frataxin protein expression in Friedreich’s ataxia patient-derived cell lines that possess varied numbers of GAA repeats. Increased frataxin protein expression was achieved by ASOs incorporating diverse chemical modifications [53].

Using the same strategy, Corey et al. [54] showed the nusinersen (Spinraza), a recently approved antisense oligonucleotide drug, can be used for the treatment of spinal muscular atrophy [54].

Pharmacological Modulation during Somatic Cell Reprogramming. Another recently evaluated strategy was based on the hypothesis that the epigenetic modifications close to GAA repeats present in Friedreich's ataxia can be reversed by pharmacological modulation during somatic cell reprogramming [55]. In this study, researchers induced the generation of pluripotent stem cells by reprogramming Friedreich's ataxia fibroblasts in the presence of various small molecules that target DNA methylation as well as histone acetylation and methylation. Treatment of these stem cells with two compounds (sodium butyrate and Parnate [tranylcypromine]), led to increased expression of the frataxin gene, which persisted for several passages [55]. However, they observed that prolonged culture of those epigenetically modified cells resulted in progressive expansion of triplet repeats and a consequent decrease in gene expression.

Histone Deacetylase (HDAC) Inhibitors. Evidence indicates that transcriptional dysregulation is a contributor to the molecular pathogenesis of Huntington disease. For this reason, histone deacetylase (HDAC) inhibitors have been tested in the treatment of Huntington disease, with the aim of correcting transcriptional dysregulation through chromatin modification. These inhibitors prevent removal of acetyl groups from histones. As a result, DNA assumes a more relaxed structure, allowing access of transcription factors to DNA and consequently, activating gene transcription.

Hockly et al. [56] explored the therapeutic potential of HDAC inhibitors by conducting preclinical trials with a potent HDAC inhibitor, suberoylanilide hydroxamic acid (SAHA), in a mouse model of HD. These researchers showed that this molecule crosses the blood-brain barrier and increases histone acetylation in the brain. Furthermore, this treatment dramatically improved motor impairment of HD mice [38]. Moreover, Mielcarek et al. [57] demonstrated that SAHA also promotes the degradation of several classes of HDACs at the protein level in various cancer cell lines and in the cortex and brain stem in mouse models.

4. Conclusion

Trinucleotide repeat expansions are responsible for the development of several genetic disorders. The instability of these repeats leads to their expansion and to the accumulation of increasing numbers of triplets from one generation to the next. This results in the phenomenon of anticipation, which is characteristic of triplet diseases, where development of symptoms occurs earlier in each generation.

To date, there is no cure for this type of disorder, although several possible treatment strategies are under investigation. The goal of most available treatments is to relieve symptoms and provide patients with a better life quality. However, the possibility of a cure for affected patients should be explored. Therefore, several approaches directed against DNA or RNA are under development based on the potential of these approaches to achieve prolonged, or even permanent, reversal of symptomatology.

Some of the approaches described interfere not only with the mutant gene or mRNA, but also with the wild-type, and for this reason might lead to dysregulation of gene expression. To avoid further adverse effects, it is essential that the treatment strategy is directed specifically to the mutant nucleic acids.

Moreover, several of the discussed strategies allow the removal of the repeat expansion, leading to total recovery of the wild-type phenotype. These treatment approaches offer the potential for the establishment of a cure for trinucleotide repeat diseases.

Author Contributions

Inês Lopes Cardoso did all the research work for this study.

Competing Interests

The authors have declared that no competing interests exist.

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